Index

A

AccessionNumber (dicom_to_cnn.enums.TagEnum.TagsStudy attribute)

AcquisitionDate (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) AcquisitionTime (dicom_to_cnn.enums.TagEnum.TagsSeries attribute)

C

calculateMaskPoint() (dicom_to_cnn.model.petctviewer.RoiElipse.RoiElipse method) (dicom_to_cnn.model.petctviewer.RoiNifti.RoiNifti method) (dicom_to_cnn.model.petctviewer.RoiPolygon.RoiPolygon method) CapturesSOPClass (class in dicom_to_cnn.enums.SopClassUID) convert_manual_row_to_object() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader class method)

convert_nifti_row_to_object() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader class method) coronal_to_axial() (dicom_to_cnn.model.petctviewer.Roi.Roi method) CorrectedImage (dicom_to_cnn.enums.TagEnum.TagPTCorrection attribute) CsvReader (class in dicom_to_cnn.model.petctviewer.CsvReader) CT (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute)

D

DecayCorrection (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) dicom_to_cnn module dicom_to_cnn.enums module dicom_to_cnn.enums.SopClassUID module dicom_to_cnn.enums.TagEnum module dicom_to_cnn.model module dicom_to_cnn.model.fusion module dicom_to_cnn.model.petctviewer module dicom_to_cnn.model.petctviewer.csv_volume module dicom_to_cnn.model.petctviewer.CsvReader module dicom_to_cnn.model.petctviewer.Roi module dicom_to_cnn.model.petctviewer.RoiElipse module dicom_to_cnn.model.petctviewer.RoiFactory module dicom_to_cnn.model.petctviewer.RoiNifti module dicom_to_cnn.model.petctviewer.RoiPolygon module dicom_to_cnn.model.post_processing module dicom_to_cnn.model.post_processing.clustering module dicom_to_cnn.model.post_processing.mip module

dicom_to_cnn.model.reader module dicom_to_cnn.model.segmentation module dicom_to_cnn.model.segmentation.dicom_seg module dicom_to_cnn.model.segmentation.nifti module dicom_to_cnn.model.segmentation.rtstruct module dicom_to_cnn.tools module dicom_to_cnn.tools.cleaning_dicom module dicom_to_cnn.tools.cleaning_dicom.cleaning_series module dicom_to_cnn.tools.cleaning_dicom.folders module dicom_to_cnn.tools.export_segmentation module dicom_to_cnn.tools.export_segmentation.generate_dict module dicom_to_cnn.tools.post_processing module dicom_to_cnn.tools.pre_processing module dicom_to_cnn.tools.pre_processing.threshold_mask module dicom_to_cnn.tools.pyradiomics module dicom_to_cnn.tools.rt_processor module dicom_to_cnn.tools.visualization module

E

EnhancedCT (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute)

EnhancedMR (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute) EnhancedPT (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute)

F

find_non_intersting_series() (in module dicom_to_cnn.tools.cleaning_dicom.cleaning_series)

find_studies_over_two_series() (in module dicom_to_cnn.tools.cleaning_dicom.cleaning_series) find_studies_with_two_series() (in module dicom_to_cnn.tools.cleaning_dicom.cleaning_series)

G

generate_dict() (in module dicom_to_cnn.tools.export_segmentation.generate_dict) generate_merged_file() (in module dicom_to_cnn.tools.cleaning_dicom.cleaning_series) get_csv_roi_details() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_date() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_difference_volume() (in module dicom_to_cnn.model.petctviewer.csv_volume) get_empty_np_array() (dicom_to_cnn.model.petctviewer.Roi.Roi method) get_manual_rois() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_mask() (dicom_to_cnn.model.petctviewer.Roi.Roi method) get_nifti_rois() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method)

get_patient_id() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_rois_results() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_series_path() (in module dicom_to_cnn.tools.cleaning_dicom.folders) get_SUL() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_sum_rois_volume() (in module dicom_to_cnn.model.petctviewer.csv_volume) get_sum_row() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_SUVlo() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_time() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader method) get_total_volume() (in module dicom_to_cnn.model.petctviewer.csv_volume)

I

ImageInAcquisition (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) ImageModalitiesSOPClass (class in dicom_to_cnn.enums.SopClassUID) ImageOrientation (dicom_to_cnn.enums.TagEnum.TagsInstance attribute)

ImagePosition (dicom_to_cnn.enums.TagEnum.TagsInstance attribute) ImageType (class in dicom_to_cnn.enums.TagEnum) (dicom_to_cnn.enums.TagEnum.ImageType attribute) InstitutionName (dicom_to_cnn.enums.TagEnum.TagsStudy attribute)

K

keep_csv_higher_volume() (in module dicom_to_cnn.model.petctviewer.csv_volume)

L

list_string_to_point_list_int() (dicom_to_cnn.model.petctviewer.CsvReader.CsvReader class method)

M

Manufacturer (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) mask_roi_in_slice() (dicom_to_cnn.model.petctviewer.Roi.Roi method) Modality (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) module dicom_to_cnn dicom_to_cnn.enums dicom_to_cnn.enums.SopClassUID dicom_to_cnn.enums.TagEnum dicom_to_cnn.model dicom_to_cnn.model.fusion dicom_to_cnn.model.petctviewer dicom_to_cnn.model.petctviewer.csv_volume dicom_to_cnn.model.petctviewer.CsvReader dicom_to_cnn.model.petctviewer.Roi dicom_to_cnn.model.petctviewer.RoiElipse dicom_to_cnn.model.petctviewer.RoiFactory dicom_to_cnn.model.petctviewer.RoiNifti dicom_to_cnn.model.petctviewer.RoiPolygon dicom_to_cnn.model.post_processing dicom_to_cnn.model.post_processing.clustering dicom_to_cnn.model.post_processing.mip dicom_to_cnn.model.reader dicom_to_cnn.model.segmentation dicom_to_cnn.model.segmentation.dicom_seg dicom_to_cnn.model.segmentation.nifti dicom_to_cnn.model.segmentation.rtstruct dicom_to_cnn.tools dicom_to_cnn.tools.cleaning_dicom dicom_to_cnn.tools.cleaning_dicom.cleaning_series dicom_to_cnn.tools.cleaning_dicom.folders dicom_to_cnn.tools.export_segmentation dicom_to_cnn.tools.export_segmentation.generate_dict dicom_to_cnn.tools.post_processing dicom_to_cnn.tools.pre_processing dicom_to_cnn.tools.pre_processing.threshold_mask dicom_to_cnn.tools.pyradiomics dicom_to_cnn.tools.rt_processor dicom_to_cnn.tools.visualization

MR (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute) MRSpectroscopy (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute) MultiframeGrayscaleByteSecondaryCaptureImageStorage (dicom_to_cnn.enums.SopClassUID.CapturesSOPClass attribute) MultiframeGrayscaleWordSecondaryCaptureImageStorage (dicom_to_cnn.enums.SopClassUID.CapturesSOPClass attribute) MultiframeSingleBitSecondaryCaptureImageStorage (dicom_to_cnn.enums.SopClassUID.CapturesSOPClass attribute) MultiframeTrueColorSecondaryCaptureImageStorage (dicom_to_cnn.enums.SopClassUID.CapturesSOPClass attribute)

N

NM (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute)

NumberOfSlices (dicom_to_cnn.enums.TagEnum.TagsSeries attribute)

P

PatientBirthDate (dicom_to_cnn.enums.TagEnum.TagsPatient attribute) PatientHeight (dicom_to_cnn.enums.TagEnum.TagsStudy attribute) PatientID (dicom_to_cnn.enums.TagEnum.TagsPatient attribute) PatientName (dicom_to_cnn.enums.TagEnum.TagsPatient attribute) PatientSex (dicom_to_cnn.enums.TagEnum.TagsPatient attribute) PatientWeight (dicom_to_cnn.enums.TagEnum.TagsStudy attribute)

PhilipsBqMlFactor (dicom_to_cnn.enums.TagEnum.PhilipsPrivateTags attribute) PhilipsPrivateTags (class in dicom_to_cnn.enums.TagEnum) PhilipsSUVFactor (dicom_to_cnn.enums.TagEnum.PhilipsPrivateTags attribute) PixelSpacing (class in dicom_to_cnn.enums.TagEnum) (dicom_to_cnn.enums.TagEnum.PixelSpacing attribute) PT (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute)

R

RadionuclideHalfLife (dicom_to_cnn.enums.TagEnum.TagsRadioPharmaceuticals attribute) RadiopharmaceuticalStartDateTime (dicom_to_cnn.enums.TagEnum.TagsRadioPharmaceuticals attribute) RadiopharmaceuticalStartTime (dicom_to_cnn.enums.TagEnum.TagsRadioPharmaceuticals attribute) read_roi() (dicom_to_cnn.model.petctviewer.RoiFactory.RoiFactory method) remove_bi_file() (in module dicom_to_cnn.tools.cleaning_dicom.folders) remove_empty_folders() (in module dicom_to_cnn.tools.cleaning_dicom.folders) remove_index_ini() (in module dicom_to_cnn.tools.cleaning_dicom.folders) remove_path_from_disk() (in module dicom_to_cnn.tools.cleaning_dicom.cleaning_series) RescaleIntercept (dicom_to_cnn.enums.TagEnum.TagsInstance attribute)

RescaleSlope (dicom_to_cnn.enums.TagEnum.TagsInstance attribute) Roi (class in dicom_to_cnn.model.petctviewer.Roi) RoiElipse (class in dicom_to_cnn.model.petctviewer.RoiElipse) RoiFactory (class in dicom_to_cnn.model.petctviewer.RoiFactory) RoiNifti (class in dicom_to_cnn.model.petctviewer.RoiNifti) RoiPolygon (class in dicom_to_cnn.model.petctviewer.RoiPolygon) RTDose (dicom_to_cnn.enums.SopClassUID.RTModalitiesSOPClass attribute) RTModalitiesSOPClass (class in dicom_to_cnn.enums.SopClassUID) RTSS (dicom_to_cnn.enums.SopClassUID.RTModalitiesSOPClass attribute) RTSTRUCT (dicom_to_cnn.enums.SopClassUID.ImageModalitiesSOPClass attribute)

S

sagittal_to_axial() (dicom_to_cnn.model.petctviewer.Roi.Roi method) save_dict_as_json() (in module dicom_to_cnn.tools.export_segmentation.generate_dict) SecondaryCaptureImageStorage (dicom_to_cnn.enums.SopClassUID.CapturesSOPClass attribute) SeriesDate (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) SeriesDescription (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) SeriesInstanceUID (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) SeriesNumber (dicom_to_cnn.enums.TagEnum.TagsSeries attribute)

SeriesTime (dicom_to_cnn.enums.TagEnum.TagsSeries attribute) SOPInstanceUID (dicom_to_cnn.enums.TagEnum.TagsInstance attribute) StudyDate (dicom_to_cnn.enums.TagEnum.TagsStudy attribute) StudyDescription (dicom_to_cnn.enums.TagEnum.TagsStudy attribute) StudyID (dicom_to_cnn.enums.TagEnum.TagsStudy attribute) StudyInstanceUID (dicom_to_cnn.enums.TagEnum.TagsStudy attribute) StudyTime (dicom_to_cnn.enums.TagEnum.TagsStudy attribute)

T

TagPTCorrection (class in dicom_to_cnn.enums.TagEnum) TagsInstance (class in dicom_to_cnn.enums.TagEnum) TagsPatient (class in dicom_to_cnn.enums.TagEnum) TagsRadioPharmaceuticals (class in dicom_to_cnn.enums.TagEnum)

TagsSeries (class in dicom_to_cnn.enums.TagEnum) TagsStudy (class in dicom_to_cnn.enums.TagEnum) threshold_matrix() (in module dicom_to_cnn.tools.pre_processing.threshold_mask) TotalDose (dicom_to_cnn.enums.TagEnum.TagsRadioPharmaceuticals attribute)

U

Units (dicom_to_cnn.enums.TagEnum.TagsSeries attribute)

W

write_json_file() (in module dicom_to_cnn.tools.cleaning_dicom.folders)